Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20960

Metabolite ID
P20960
Deionized mass
934.2745 Da
Average m/z
935.2821
Average RT
13.4497
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.636e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.516e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.587e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.587e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.17e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.08e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.08e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.99e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.206e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)9.958e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)6.972e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)6.972e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)6.972e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)6.972e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.734e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.095e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.854e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.636e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.636e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.636e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.636e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)4.097e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.079e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.247e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.659e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.971e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.971e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)9.895e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.566e-11
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)4.294e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)4.294e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)1.008e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.436e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.436e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.389e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.767e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.708e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.708e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.515e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.588e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.588e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.587e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.211e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.617e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.955e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.837e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.955e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.955e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.84e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.809e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.115e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.834e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.83e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.979e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)8.435e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.275e-11