Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20704

Metabolite ID
P20704
Deionized mass
551.2280 Da
Average m/z
552.2348
Average RT
13.3736
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.02e-19
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.539e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.539e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)8.44e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.511e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.406e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.784e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.874e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.768e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.972e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)7.185e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.574e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.574e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.574e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.321e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.321e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.5e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.97e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.442e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.967e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)8.427e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.352e-18
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.138e-17
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.502e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.502e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.502e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.502e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.377e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.91e-14
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.196e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.196e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.196e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.582e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.582e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.361e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.679e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)2.328e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.005e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.35e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.488e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.35e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.35e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.788e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.953e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.886e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.151e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)7.505e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)4.618e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.694e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.694e-14
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.441e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.333e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.55e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.521e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.521e-15
Glyma.19G140800 hypothetical protein AT2G41860:CPK14:calcium-dependent protein kinase 14 1Chr19:40214988–40219723 (-)9.865e-11
Glyma.19G147000 hypothetical protein NA 1Chr19:40784257–40785271 (-)2.598e-11
Glyma.19G147100 hypothetical protein NA 1Chr19:40799107–40802473 (+)2.598e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.388e-14
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)8.085e-13
Glyma.20G222800 hypothetical protein AT3G04760:AT3G04760:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr20:45748122–45750353 (+)2.495e-13