Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20665

Metabolite ID
P20665
Deionized mass
290.0985 Da
Average m/z
291.1049
Average RT
13.3611
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.218e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.862e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.224e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.723e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)7.417e-13
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)3.65e-13
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)1.89e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.698e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.072e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.279e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.279e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.078e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.218e-13
Glyma.01G154500 hypothetical protein AT1G31780:AT1G31780:oligomeric golgi complex subunit 1Chr01:49196540–49201707 (+)6.3e-11
Glyma.02G060700 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr02:5508103–5512617 (+)7.636e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.072e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.345e-13
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)1.043e-11
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)1.043e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.949e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)5.93e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.592e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.978e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.701e-15
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)4.585e-11
Glyma.06G223100 hypothetical protein NA 1Chr06:29407485–29421245 (+)4.997e-11
Glyma.06G223300 hypothetical protein AT4G30860:SDG4:SET domain group 4 1Chr06:29529765–29549738 (+)2.535e-11
Glyma.06G224700 hypothetical protein NA 1Chr06:30524373–30529915 (-)2.535e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.278e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.31e-12
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)8.672e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.383e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.985e-13
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.985e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.156e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)5.166e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.331e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.331e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.331e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.331e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.046e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.034e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.126e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.126e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.126e-13
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)3.441e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.163e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.621e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.224e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.803e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.903e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.903e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.279e-15
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)6.932e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)6.932e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.231e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.723e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.723e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.941e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.947e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.425e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)4.312e-12