Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20566

Metabolite ID
P20566
Deionized mass
924.3937 Da
Average m/z
925.3994
Average RT
13.3363
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 2Chr12:36390283–36394245 (-)7.536e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.893e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.054e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.785e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.785e-12
Glyma.13G168000 hypothetical protein NA 2Chr13:28248114–28251357 (-)6.393e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.984e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.014e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.947e-12
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)7.174e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.955e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.723e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.393e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.993e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.061e-13
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.341e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.341e-12
Glyma.07G209600 hypothetical protein NA 1Chr07:38037644–38043272 (+)8.21e-15
Glyma.09G049500 hypothetical protein AT3G45010:scpl48:serine carboxypeptidase-like 48 1Chr09:4298702–4302403 (-)9.197e-11
Glyma.09G049800 hypothetical protein AT4G20130:PTAC14:plastid transcriptionally active 14 1Chr09:4331001–4339191 (+)9.197e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.231e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.81e-11
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 1Chr09:43432969–43437575 (-)8.794e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)4.055e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.809e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.035e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)3.412e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.054e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.36e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.563e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.785e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.785e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.817e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.254e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.443e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.984e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.339e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.383e-14
Glyma.16G136600 hypothetical protein NA 1Chr16:29363327–29374233 (-)2.162e-12
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)1.467e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.697e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)8.857e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.307e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.032e-11
Glyma.20G108600 hypothetical protein NA 1Chr20:35099991–35104464 (+)2.477e-12