Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20562

Metabolite ID
P20562
Deionized mass
132.0565 Da
Average m/z
133.0628
Average RT
13.3356
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.761e-12
Glyma.14G171400 hypothetical protein NA 3Chr14:42398866–42404627 (+)1.519e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.163e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.091e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.493e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.505e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.428e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.761e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)8.25e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)8.25e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)8.25e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)8.25e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)8.25e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)8.25e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)8.25e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.923e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.923e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.039e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.4e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)8.277e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)9.877e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)8.11e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)2.009e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.264e-14
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)4.217e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.646e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.699e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.699e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.699e-11
Glyma.05G182100 hypothetical protein NA 1Chr05:37003489–37004855 (-)4.492e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)1.484e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.537e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.253e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.907e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.907e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.907e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.446e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.446e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.636e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.694e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.568e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.358e-14
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)4.426e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.428e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.163e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.062e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.127e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.091e-12
Glyma.14G170900 hypothetical protein AT1G78060:AT1G78060:Glycosyl hydrolase family protein 1Chr14:42298358–42306613 (-)1.927e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)1.02e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.493e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.754e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.468e-14
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.468e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.007e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.381e-14
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.159e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.803e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.233e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.601e-15
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.098e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)8.218e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)8.476e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.51e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.51e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)3.997e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.078e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.078e-13