Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20530

Metabolite ID
P20530
Deionized mass
1146.3458 Da
Average m/z
1147.3528
Average RT
13.3277
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.566e-15
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.35e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 2Chr06:49420013–49426780 (-)1.316e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.149e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)6.104e-11
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)3.51e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.012e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.012e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.217e-16
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.326e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.764e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.581e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.941e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.993e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.427e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.735e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.735e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.17e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.506e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.506e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.506e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.083e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.693e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.693e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.693e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.465e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.117e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.566e-15
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.566e-15
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.053e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.631e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.641e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)8.843e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)8.843e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.35e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.35e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.767e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)6.582e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)9.179e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)3.372e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.382e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.949e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.949e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.455e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.149e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.318e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.671e-17
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)5.011e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.656e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.656e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.37e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)5.087e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)4.559e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.416e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.677e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)8.706e-11
Glyma.16G159300 hypothetical protein NA 1Chr16:31903993–31908962 (+)2.19e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)4.401e-13
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)2.92e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)6.616e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.573e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.116e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.609e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.514e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.514e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)1.401e-12
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)1.401e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.719e-14
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.773e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.304e-11