Overview Annotation GWAS Evidence Associated genes

P20442

Metabolite ID
P20442
Deionized mass
492.2238 Da
Average m/z
493.2283
Average RT
13.3063
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
25
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

25 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.983e-16
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.742e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.078e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.945e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.945e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.944e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.929e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.239e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.239e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.913e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.913e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.297e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.296e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.565e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.565e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.96e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.96e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.366e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.071e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.169e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.169e-12
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)7.456e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)7.456e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.97e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.3e-11