Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20312

Metabolite ID
P20312
Deionized mass
256.0787 Da
Average m/z
257.0883
Average RT
13.2693
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G064100 hypothetical protein NA 4Chr16:6322034–6325343 (-)3.545e-12
Glyma.07G013800 hypothetical protein AT5G35790:G6PD1:glucose-6-phosphate dehydrogenase 1 3Chr07:1073133–1082652 (+)2.151e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.37e-11
Glyma.07G010200 hypothetical protein NA 2Chr07:753451–763749 (-)2.342e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.818e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.764e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.764e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)4.825e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.097e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.847e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.752e-12
Glyma.07G009600 hypothetical protein AT3G13860:HSP60-3A:heat shock protein 60-3A 1Chr07:718009–725377 (-)5.851e-11
Glyma.07G010400 hypothetical protein AT3G13750:BGAL1:beta galactosidase 1 1Chr07:783384–789811 (-)2.151e-11
Glyma.07G010500 hypothetical protein AT1G55150:RH20:DEA(D/H)-box RNA helicase family protein 1Chr07:803172–810263 (+)2.342e-12
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)2.342e-12
Glyma.07G010800 hypothetical protein NA 1Chr07:824697–827823 (-)2.342e-12
Glyma.07G010900 hypothetical protein AT1G55180:PLDEPSILON:phospholipase D alpha 4 1Chr07:830443–834361 (-)2.342e-12
Glyma.07G011000 hypothetical protein NA 1Chr07:838965–841202 (+)2.151e-11
Glyma.07G011100 hypothetical protein AT3G13700:AT3G13700:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr07:843406–847022 (+)2.342e-12
Glyma.07G011200 hypothetical protein AT5G49010:SLD5:DNA replication protein-like protein 1Chr07:847783–850968 (-)2.342e-12
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)2.151e-11
Glyma.07G011600 hypothetical protein AT3G21250:ABCC8:multidrug resistance-associated protein 6 1Chr07:885910–891586 (+)2.342e-12
Glyma.07G012500 hypothetical protein AT1G51720:AT1G51720:Amino acid dehydrogenase family protein 1Chr07:977060–987360 (+)2.151e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.919e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.919e-13
Glyma.07G013700 hypothetical protein AT4G29990:AT4G29990:Leucine-rich repeat transmembrane protein kinase protein 1Chr07:1063337–1068561 (-)2.151e-11
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)2.464e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.4e-13
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.564e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.564e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)9.482e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.05e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.107e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.359e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.013e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.013e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.443e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.443e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.764e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.677e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)5.478e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)7.675e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.722e-11
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.24e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)3.151e-13
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)1.039e-11
Glyma.16G066900 hypothetical protein NA 1Chr16:6636803–6639454 (+)6.906e-11
Glyma.16G160200 hypothetical protein NA 1Chr16:31969869–31972840 (+)5.256e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.099e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.932e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.304e-11
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)2.75e-11
Glyma.18G252200 hypothetical protein NA 1Chr18:53899264–53899758 (+)1.605e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.643e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)6.036e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)5.339e-11