Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20170

Metabolite ID
P20170
Deionized mass
683.2829 Da
Average m/z
684.2897
Average RT
13.2338
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.425e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.092e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.092e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)9.609e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)7.565e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)5.56e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.099e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.099e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.143e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.915e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.425e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.425e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.425e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.425e-11
Glyma.12G055100 hypothetical protein AT5G12900:AT5G12900:DNA double-strand break repair RAD50 ATPase 1Chr12:3988442–3991287 (-)2.097e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.581e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.581e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.797e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.797e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.7e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.7e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.092e-12
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)5.642e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.28e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.734e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.734e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.769e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)4.906e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.257e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.196e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.813e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)7.588e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.027e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.24e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.24e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)9.609e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.482e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.758e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.264e-13
Glyma.20G105900 hypothetical protein AT2G16990:AT2G16990:Major facilitator superfamily protein 1Chr20:34832271–34839955 (-)9.909e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.073e-12