Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20019

Metabolite ID
P20019
Deionized mass
644.6261 Da
Average m/z
645.6353
Average RT
13.1906
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
69
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

69 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G148400 hypothetical protein AT2G45710:AT2G45710:Zinc-binding ribosomal protein family protein 4Chr16:30901868–30903453 (+)4.286e-14
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.301e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.465e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)3.305e-13
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)2.473e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.65e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.27e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.054e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)8.424e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.756e-12
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)5.475e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.203e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.315e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.786e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.786e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.786e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.778e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.671e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.943e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.247e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.211e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.211e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.735e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)9.274e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.715e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.715e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)3.184e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.921e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.65e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.65e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.65e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.65e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.686e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.686e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.475e-11
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)9.188e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.729e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.875e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.875e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.875e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.875e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.282e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.282e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.781e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.136e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.989e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.398e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)1.265e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)1.265e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.557e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.819e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.557e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.557e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.879e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.901e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.667e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)3.137e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.135e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.85e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.383e-15
Glyma.16G148300 hypothetical protein NA 1Chr16:30894657–30897411 (-)6.127e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.465e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.305e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.216e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.216e-13
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.359e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.908e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.162e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.278e-14