Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20011

Metabolite ID
P20011
Deionized mass
398.2269 Da
Average m/z
399.2334
Average RT
13.1877
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.517e-11
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)5.444e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.161e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.54e-11
Glyma.18G106600 hypothetical protein NA 3Chr18:11947553–11951868 (+)2.305e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)2.68e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.563e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)5.713e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.315e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.62e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.62e-12
Glyma.13G183400 hypothetical protein NA 2Chr13:29666942–29670201 (+)2.072e-12
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 2Chr13:31428112–31429431 (-)3.195e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 2Chr13:31727841–31735910 (-)9.654e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.894e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.194e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)2.796e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.517e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)4.69e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)4.69e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)4.69e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.697e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.697e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.261e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.419e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.552e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.146e-11
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)4.227e-12
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)4.227e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.14e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.868e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.063e-16
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.93e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.658e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)8.638e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.447e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.317e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.007e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.175e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.175e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.315e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.071e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.071e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.071e-13
Glyma.05G166800 SHOOT1 SHOOT1 protein AT1G55480:ZKT:protein containing PDZ domain, a K-box domain, and a TPR region 1Chr05:35731069–35735416 (+)6.64e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.672e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.417e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.307e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.346e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.346e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.346e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.346e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.614e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.782e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.833e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.625e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.625e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.625e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.009e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.009e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.354e-12
Glyma.06G285200 hypothetical protein AT2G31060:EMB2785:elongation factor family protein 1Chr06:47380397–47390651 (+)8.053e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.674e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.364e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.674e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.674e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.364e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.669e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.171e-12
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)1.525e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)5.473e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.062e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.61e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.445e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)9.66e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.239e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.006e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.006e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.006e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.006e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.217e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.746e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.047e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.047e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.047e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.047e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.16e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.16e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.16e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)7.797e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.585e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.585e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.187e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.187e-11
Glyma.13G055200 hypothetical protein AT3G02200:AT3G02200:Proteasome component (PCI) domain protein 1Chr13:15229290–15234025 (-)9.378e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.759e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.161e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.62e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.62e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.234e-11
Glyma.13G198900 hypothetical protein NA 1Chr13:31269355–31270563 (-)8.064e-12
Glyma.13G200400 hypothetical protein NA 1Chr13:31403066–31411738 (+)2.721e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)9.654e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.107e-16
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.963e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.963e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.569e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.894e-14
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)9.937e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)9.937e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.194e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.451e-13
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.451e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.954e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.3e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.954e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.954e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.196e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.107e-15
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.521e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.934e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.733e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.351e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.427e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.986e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.312e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.531e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)2.495e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.228e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)4.229e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)4.229e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.806e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.942e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.796e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.924e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.796e-11
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 1Chr18:11773374–11782733 (+)6.858e-11
Glyma.18G106300 hypothetical protein NA 1Chr18:11900700–11905446 (-)6.858e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)6.272e-14
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)6.272e-14
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)8.668e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.403e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.843e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.843e-14
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)8.479e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.709e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.216e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.013e-13