P19937
Metabolite ID
P19937
Deionized mass
661.2024 Da
Average m/z
662.2072
Average RT
13.1625
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
110
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
Loading GWAS records…
Loading Manhattan plot…
This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
Loading Q–Q plot…
Loading GWAS summary…
Associated genes
110 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.13G203300 | hypothetical protein | AT3G63530:BB:RING/U-box superfamily protein | 3 | Chr13:31727841–31735910 (-) | 2.792e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 2 | Chr03:169480–172727 (+) | 1.966e-12 | |
| Glyma.03G120100 | hypothetical protein | AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 | 2 | Chr03:33174618–33180955 (+) | 5.384e-12 | |
| Glyma.06G207100 | hypothetical protein | AT1G73990:SPPA:signal peptide peptidase | 2 | Chr06:19963095–19969940 (-) | 2.746e-11 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 2 | Chr07:1697119–1698666 (+) | 1.385e-16 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 4.359e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 1.046e-12 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 3.309e-14 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 3.309e-14 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 2 | Chr19:1123637–1130946 (+) | 1.265e-11 | |
| Glyma.20G218500 | hypothetical protein | AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… | 2 | Chr20:45428471–45432099 (+) | 3.574e-11 | |
| Glyma.01G010400 | SLTI248 | DEAD-box RNA helicase | AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein | 1 | Chr01:1009200–1013846 (+) | 1.436e-11 |
| Glyma.02G107400 | hypothetical protein | NA | 1 | Chr02:10245905–10246706 (-) | 3.754e-11 | |
| Glyma.02G133800 | hypothetical protein | AT1G49660:CXE5:carboxyesterase 5 | 1 | Chr02:13850366–13851962 (-) | 5.366e-11 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 7.363e-13 | |
| Glyma.02G287700 | hypothetical protein | AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … | 1 | Chr02:46797935–46805223 (-) | 1.037e-12 | |
| Glyma.03G002100 | hypothetical protein | AT5G01930:MAN6:Glycosyl hydrolase superfamily protein | 1 | Chr03:211934–216522 (+) | 3.21e-13 | |
| Glyma.03G002400 | hypothetical protein | AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 | 1 | Chr03:234217–238375 (-) | 3.21e-13 | |
| Glyma.03G007900 | hypothetical protein | NA | 1 | Chr03:764330–766878 (-) | 7.145e-11 | |
| Glyma.03G124500 | hypothetical protein | NA | 1 | Chr03:33758928–33762195 (+) | 1.016e-12 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 3.829e-12 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 1.34e-11 | |
| Glyma.04G116900 | hypothetical protein | NA | 1 | Chr04:13696275–13700803 (+) | 1.743e-11 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 6.056e-11 | |
| Glyma.05G219200 | hypothetical protein | NA | 1 | Chr05:39875137–39879113 (-) | 1.056e-11 | |
| Glyma.05G231800 | ALDH2C1 | aldehyde dehydrogenase family 2 member C1 | AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 | 1 | Chr05:40924505–40929251 (+) | 1.465e-13 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 5.612e-12 | |
| Glyma.06G019800 | hypothetical protein | NA | 1 | Chr06:1494230–1501925 (+) | 1.18e-12 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 2.511e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 2.511e-11 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 2.749e-11 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 2.749e-11 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 2.749e-11 | |
| Glyma.06G313500 | hypothetical protein | NA | 1 | Chr06:50191600–50203098 (-) | 1.114e-11 | |
| Glyma.06G316500 | hypothetical protein | AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein | 1 | Chr06:50531222–50538652 (-) | 8.042e-11 | |
| Glyma.07G013400 | hypothetical protein | AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | 1 | Chr07:1028243–1033837 (-) | 4.641e-11 | |
| Glyma.07G013500 | hypothetical protein | NA | 1 | Chr07:1036819–1041984 (-) | 4.641e-11 | |
| Glyma.07G021100 | hypothetical protein | NA | 1 | Chr07:1647678–1650627 (+) | 7.013e-17 | |
| Glyma.07G021600 | hypothetical protein | AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | 1 | Chr07:1673827–1680014 (-) | 7.013e-17 | |
| Glyma.07G021700 | hypothetical protein | NA | 1 | Chr07:1684537–1692320 (+) | 4.042e-13 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 8.691e-15 | |
| Glyma.08G122200 | hypothetical protein | NA | 1 | Chr08:9416766–9429995 (-) | 4.359e-12 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 4.359e-12 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 4.359e-12 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 4.359e-12 | |
| Glyma.08G139300 | hypothetical protein | AT2G22125:CSI1:binding protein | 1 | Chr08:10653279–10664544 (-) | 1.237e-11 | |
| Glyma.08G183700 | Fasciclin-like arabinogalactan protein 19 | NA | 1 | Chr08:14738283–14742033 (+) | 4.196e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 4.87e-13 | |
| Glyma.09G251800 | hypothetical protein | AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein | 1 | Chr09:47220796–47224266 (+) | 2.281e-11 | |
| Glyma.10G038200 | hypothetical protein | NA | 1 | Chr10:3394443–3395342 (-) | 3.633e-11 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 7.681e-11 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 7.681e-11 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 7.681e-11 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 7.681e-11 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 5.824e-11 | |
| Glyma.11G064300 | hypothetical protein | AT4G36780:BEH2:BES1/BZR1 homolog 2 | 1 | Chr11:4849799–4851673 (+) | 8.568e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 6.759e-12 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 6.759e-12 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 6.759e-12 | |
| Glyma.12G008300 | hypothetical protein | AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 1 | Chr12:613939–617457 (+) | 4.339e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 7.202e-13 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 7.202e-13 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 1.98e-11 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 1.98e-11 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 3.002e-11 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 3.002e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.046e-12 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 5.777e-11 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 4.599e-12 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 5.366e-16 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 2.169e-12 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 2.169e-12 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 3.309e-14 | |
| Glyma.13G142200 | hypothetical protein | AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 | 1 | Chr13:25483702–25502265 (+) | 4.58e-12 | |
| Glyma.13G142500 | hypothetical protein | NA | 1 | Chr13:25548232–25550097 (+) | 6.803e-11 | |
| Glyma.13G181100 | hypothetical protein | AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein | 1 | Chr13:29426889–29433599 (-) | 5.032e-12 | |
| Glyma.13G203200 | hypothetical protein | AT3G52105:AT3G52105:DIS3-exonuclease-like protein | 1 | Chr13:31720004–31725252 (+) | 6.961e-11 | |
| Glyma.13G203600 | hypothetical protein | AT5G13490:AAC2:ADP/ATP carrier 2 | 1 | Chr13:31753843–31756013 (-) | 2.792e-11 | |
| Glyma.13G203700 | hypothetical protein | NA | 1 | Chr13:31780982–31784218 (+) | 6.961e-11 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 2.109e-14 | |
| Glyma.14G013500 | hypothetical protein | AT4G25434:NUDT10:nudix hydrolase homolog 10 | 1 | Chr14:1009519–1014238 (+) | 2.904e-13 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 3.742e-12 | |
| Glyma.14G071700 | hypothetical protein | AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 | 1 | Chr14:6037810–6041899 (+) | 1.339e-11 | |
| Glyma.14G071900 | hypothetical protein | AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… | 1 | Chr14:6043655–6049030 (+) | 1.339e-11 | |
| Glyma.14G072200 | Ipk1 | AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… | 1 | Chr14:6059598–6063755 (-) | 1.024e-13 | |
| Glyma.14G077100 | hypothetical protein | AT5G42610:AT5G42610:calcium uniporter (DUF607) | 1 | Chr14:6486139–6488935 (+) | 4.371e-11 | |
| Glyma.14G077200 | hypothetical protein | AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein | 1 | Chr14:6498564–6506068 (+) | 4.371e-11 | |
| Glyma.14G077300 | hypothetical protein | AT1G75040:PR5:pathosis-related protein 5 | 1 | Chr14:6508609–6520744 (-) | 4.371e-11 | |
| Glyma.14G201600 | hypothetical protein | NA | 1 | Chr14:46703283–46706500 (+) | 5.605e-11 | |
| Glyma.14G201700 | hypothetical protein | NA | 1 | Chr14:46711634–46715644 (-) | 5.605e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 7.353e-12 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 1.141e-13 | |
| Glyma.15G256300 | hypothetical protein | NA | 1 | Chr15:48546007–48547401 (-) | 1.97e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 2.871e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 5.841e-11 | |
| Glyma.16G127400 | hypothetical protein | AT5G66200:ARO2:armadillo repeat only 2 | 1 | Chr16:27917182–27920446 (-) | 3.694e-11 | |
| Glyma.16G130300 | hypothetical protein | NA | 1 | Chr16:28381466–28384134 (+) | 2.135e-11 | |
| Glyma.17G064000 | hypothetical protein | AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein | 1 | Chr17:4924830–4930155 (-) | 7.759e-11 | |
| Glyma.17G064200 | hypothetical protein | AT5G57500:AT5G57500:Galactosyltransferase family protein | 1 | Chr17:4943412–4944357 (-) | 7.759e-11 | |
| Glyma.18G072800 | hypothetical protein | AT1G55760:AT1G55760:BTB/POZ domain-containing protein | 1 | Chr18:6873417–6878947 (-) | 1.122e-12 | |
| Glyma.18G263900 | hypothetical protein | AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein | 1 | Chr18:54907058–54912936 (-) | 5.157e-14 | |
| Glyma.19G011600 | hypothetical protein | NA | 1 | Chr19:1111789–1116419 (+) | 4.631e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 1.314e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 1.314e-11 | |
| Glyma.20G113800 | hypothetical protein | NA | 1 | Chr20:35570275–35571787 (+) | 6.677e-11 | |
| Glyma.20G114100 | hypothetical protein | AT1G25480:AT1G25480:aluminum activated malate transporter family protein | 1 | Chr20:35586177–35589284 (-) | 6.677e-11 | |
| Glyma.20G114400 | hypothetical protein | AT1G68585:AT1G68585:uncharacterized protein | 1 | Chr20:35614355–35616709 (-) | 4.626e-13 | |
| Glyma.20G179000 | hypothetical protein | NA | 1 | Chr20:41630613–41632249 (-) | 5.426e-15 | |
| Glyma.20G221400 | hypothetical protein | NA | 1 | Chr20:45645388–45648171 (-) | 9.059e-11 | |
| Glyma.20G222300 | hypothetical protein | AT2G20410:AT2G20410:RNA-binding ASCH domain protein | 1 | Chr20:45708496–45710397 (-) | 9.059e-11 |