Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19729

Metabolite ID
P19729
Deionized mass
125.0846 Da
Average m/z
126.0911
Average RT
13.1067
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
117
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

117 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.69e-11
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.126e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.806e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)4.142e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)7.862e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.862e-15
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.266e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.266e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.266e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.231e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.801e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.247e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.247e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.177e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.46e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.17e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.252e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)6.313e-12
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)1.529e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)3.814e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.735e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.75e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.75e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.75e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.762e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.753e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.865e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.67e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.546e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.249e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.763e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.062e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.062e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.87e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.445e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.445e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.445e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.652e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.092e-17
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.604e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.604e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.604e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.09e-11
Glyma.06G203800 hypothetical protein NA 1Chr06:19090082–19094822 (-)8.404e-11
Glyma.06G260200 hypothetical protein AT1G60690:AT1G60690:NAD(P)-linked oxidoreductase superfamily protein__AT1G60710:ATB2:NAD(P)-linked oxidoreductase super… 1Chr06:44529441–44533552 (-)9.268e-11
Glyma.06G260300 hypothetical protein AT1G60730:AT1G60730:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:44535490–44539648 (-)9.268e-11
Glyma.06G260500 hypothetical protein NA 1Chr06:44554415–44557883 (+)3.073e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.032e-16
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.69e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.69e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.815e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.862e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.862e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.862e-15
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.308e-12
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)2.08e-11
Glyma.08G150500 hypothetical protein NA 1Chr08:11575936–11583373 (+)9.857e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.685e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)5.577e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.266e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.266e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.266e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.266e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.266e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.644e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.685e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.284e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)1.447e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.828e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.435e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)8.92e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)8.92e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)8.92e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)8.92e-13
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)4.517e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)6.783e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.088e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.209e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.21e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.451e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.451e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.583e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.472e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.472e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.64e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.801e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.223e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.223e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.247e-16
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.954e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.864e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.705e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.983e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.941e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.385e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.941e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.941e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.692e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.931e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)3.573e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.478e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.702e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.903e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.806e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.954e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.954e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.542e-15
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.035e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)1.876e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)1.876e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.46e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.918e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.918e-16
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.888e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.35e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.398e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)9.916e-13