Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19680

Metabolite ID
P19680
Deionized mass
744.3641 Da
Average m/z
745.3730
Average RT
13.0962
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.861e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.79e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.541e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.501e-14
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.497e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.641e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)5.72e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.766e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)6.278e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.039e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.327e-12
Glyma.06G037500 hypothetical protein NA 1Chr06:2876797–2877488 (+)6.305e-11
Glyma.06G037800 hypothetical protein NA 1Chr06:2894530–2896325 (-)4.356e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.825e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.825e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.665e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.215e-15
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.861e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.861e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.968e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.781e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.942e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.942e-12
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)4.793e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.096e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.778e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.899e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.412e-12
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)4.607e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)2.926e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.63e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.745e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)7.058e-13
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)6.381e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.28e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.558e-18
Glyma.12G049500 hypothetical protein AT2G43560:AT2G43560:FKBP-like peptidyl-prolyl cis-trans isomerase family protein 1Chr12:3547790–3551313 (+)1.353e-11
Glyma.12G050200 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr12:3600553–3604637 (-)1.353e-11
Glyma.12G055100 hypothetical protein AT5G12900:AT5G12900:DNA double-strand break repair RAD50 ATPase 1Chr12:3988442–3991287 (-)6.387e-11
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)1.099e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)7.91e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.219e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.501e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.307e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.122e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.016e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.513e-11
Glyma.15G037300 hypothetical protein AT5G59430:TRP1:telomeric repeat binding protein 1 1Chr15:2940192–2946115 (-)2.681e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.633e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.285e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.633e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)1.633e-11
Glyma.19G004700 Protein RST1 AT3G27670:RST1:ARM repeat superfamily protein 1Chr19:379721–392669 (-)9.202e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.224e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.317e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.317e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.308e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.308e-14
Glyma.19G138700 hypothetical protein AT2G41740:VLN2:villin 2 1Chr19:40010487–40023584 (-)4.211e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.782e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.03e-12