Overview Annotation GWAS Evidence Associated genes

P19494

Metabolite ID
P19494
Deionized mass
409.1981 Da
Average m/z
410.2046
Average RT
13.0645
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
30
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

30 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.427e-14
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.651e-13
Glyma.12G015800 hypothetical protein NA 2Chr12:1126280–1132370 (-)1.121e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.891e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.089e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.089e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.152e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.484e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.484e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.484e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.244e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.042e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.249e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.249e-12
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)1.321e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.996e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.996e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.515e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.792e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.736e-11
Glyma.12G014800 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr12:1071368–1079413 (+)1.121e-11
Glyma.12G018000 hypothetical protein NA 1Chr12:1252709–1256330 (-)7.585e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.191e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.191e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.944e-11
Glyma.13G323800 NRT2 NRT2 protein AT1G08090:NRT2:1:nitrate transporter 2:1__AT1G08100:NRT2.2:nitrate transporter 2.2__AT5G60770:NRT2.4:nitrate transporte… 1Chr13:41826206–41828824 (-)8.161e-11
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)1.546e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.398e-11
Glyma.17G250700 hypothetical protein AT1G75210:AT1G75210:HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 1Chr17:40550521–40557680 (+)1.664e-11
Glyma.17G250800 hypothetical protein NA 1Chr17:40558554–40564000 (-)1.664e-11