Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19492

Metabolite ID
P19492
Deionized mass
246.1435 Da
Average m/z
247.1515
Average RT
13.0641
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.91e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.029e-15
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.38e-11
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)2e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)4.223e-13
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.339e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.193e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.266e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.266e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.289e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.87e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.87e-14
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)2.576e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.772e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.327e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.91e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.102e-16
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.102e-16
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)3.421e-11
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)6.995e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.335e-14
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)9.95e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.89e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.243e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.322e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.991e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.833e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.833e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.219e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.65e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.829e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.537e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.542e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.266e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.266e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.905e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.266e-12
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)2.909e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.848e-14
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)9.571e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.885e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.312e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.561e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.561e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.561e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.144e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.144e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.029e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.315e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.529e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.529e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.87e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.068e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.053e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.089e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.306e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.897e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.02e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.553e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.486e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.8e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.199e-16
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.452e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.68e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.616e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.408e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.506e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.506e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.47e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.38e-11
Glyma.19G009600 hypothetical protein NA 1Chr19:902949–903967 (-)9.418e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.924e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.924e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)6.019e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.54e-12