Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18989

Metabolite ID
P18989
Deionized mass
364.1347 Da
Average m/z
365.1418
Average RT
12.9065
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)6.348e-17
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.423e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.676e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.03e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.62e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.509e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.134e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.134e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.373e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.195e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.831e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)2.954e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)2.954e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.653e-11
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)8.624e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)4.14e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)4.14e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.012e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.614e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.514e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.648e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.648e-11
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)7.846e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.875e-13
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)5.859e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)8.397e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.882e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.423e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.423e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.423e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.423e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.532e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.309e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.034e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.633e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.739e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.739e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)9.157e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)3.07e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.603e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.142e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.142e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.102e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.03e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.581e-14
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.581e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.581e-14
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)7.932e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.688e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.501e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.056e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.502e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.502e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.915e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.031e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)2.929e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.798e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.478e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.764e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.34e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.807e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.485e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.485e-13
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)5.493e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.509e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.053e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)6.027e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.548e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.306e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.722e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.88e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.88e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)4.671e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.159e-11