Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18917

Metabolite ID
P18917
Deionized mass
256.1642 Da
Average m/z
257.1721
Average RT
12.8877
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.295e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.6e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.6e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.6e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.598e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)4.591e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.797e-13
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.267e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)9.2e-11
Glyma.03G143300 hypothetical protein NA 1Chr03:35907767–35909994 (+)5.443e-12
Glyma.03G143400 hypothetical protein NA 1Chr03:35911090–35915266 (-)5.907e-11
Glyma.03G143600 hypothetical protein NA 1Chr03:35928279–35931862 (-)5.443e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.853e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.083e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.663e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.985e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.985e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.985e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.235e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.169e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.651e-18
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)5.458e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.751e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.889e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.889e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.188e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.578e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.6e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.6e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.6e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.6e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.6e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.591e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.348e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.673e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.673e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.673e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.673e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.337e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)9.271e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.422e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.423e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.423e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.219e-12
Glyma.14G094500 hypothetical protein NA 1Chr14:8788109–8793948 (-)2.657e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.699e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.55e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.277e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.55e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.55e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.936e-13
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)7.94e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)4.591e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.098e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)4.591e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.447e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)9.078e-11