Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18872

Metabolite ID
P18872
Deionized mass
454.1801 Da
Average m/z
455.1861
Average RT
12.8663
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.698e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.43e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.578e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.291e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.02e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.02e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.02e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.371e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)6.666e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)1.285e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)2.107e-12
Glyma.04G083600 hypothetical protein NA 1Chr04:7048192–7052947 (-)2.258e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.242e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.854e-13
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)3.908e-11
Glyma.04G103500 hypothetical protein AT1G78110:AT1G78110:nucleolar GTP-binding protein 1Chr04:9624916–9626694 (-)2.475e-12
Glyma.04G103800 hypothetical protein NA 1Chr04:9705282–9705434 (+)1.287e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.85e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.383e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.02e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.02e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.02e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.682e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.02e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.02e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.489e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.613e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.617e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.029e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.397e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.698e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.698e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.698e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.698e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.368e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.222e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.222e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.626e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)9.67e-11
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)2.012e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.238e-13
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)6.795e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.654e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.414e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.995e-12