Overview Annotation GWAS Evidence Associated genes

P18583

Metabolite ID
P18583
Deionized mass
286.0469 Da
Average m/z
287.0533
Average RT
12.7901
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
17
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

17 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.10G193800 hypothetical protein NA 8Chr10:42580656–42599131 (+)2.136e-103
Glyma.10G194800 hypothetical protein NA 4Chr10:42686749–42691742 (+)3.841e-48
Glyma.10G193500 SODB2 iron-superoxide dismutase AT4G25100:FSD1:Fe superoxide dismutase 1 3Chr10:42564218–42568587 (-)2.136e-103
Glyma.10G192800 hypothetical protein AT1G04650:AT1G04650:holliday junction resolvase 2Chr10:42511753–42518160 (+)2.136e-103
Glyma.10G193100 hypothetical protein AT3G23020:AT3G23020:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr10:42542002–42544975 (+)3.934e-34
Glyma.10G194300 hypothetical protein AT5G61580:PFK4:phosphofructokinase 4 2Chr10:42632925–42642953 (-)2.136e-103
Glyma.10G191700 hypothetical protein NA 1Chr10:42434017–42435482 (-)2.279e-19
Glyma.10G191800 hypothetical protein NA 1Chr10:42439119–42442119 (+)5.029e-31
Glyma.10G192000 NF-YB1a NA 1Chr10:42450626–42455192 (+)5.63e-40
Glyma.10G192400 hypothetical protein AT3G24180:AT3G24180:Beta-glucosidase, GBA2 type family protein 1Chr10:42475154–42487321 (-)1.511e-11
Glyma.10G193400 hypothetical protein AT4G13620:AT4G13620:Integrase-type DNA-binding superfamily protein 1Chr10:42562106–42563793 (+)3.934e-34
Glyma.10G193600 hypothetical protein AT5G07475:AT5G07475:Cupredoxin superfamily protein 1Chr10:42570070–42571181 (-)2.136e-103
Glyma.10G194200 hypothetical protein NA 1Chr10:42630111–42632551 (-)3.934e-34
Glyma.10G194500 hypothetical protein NA 1Chr10:42656926–42664986 (+)2.086e-13
Glyma.10G194900 hypothetical protein NA 1Chr10:42694105–42699129 (+)4.141e-24
Glyma.10G196000 hypothetical protein NA 1Chr10:42749400–42751583 (+)3.841e-48
Glyma.17G235300 D14 AT3G03990:AT3G03990:alpha/beta-Hydrolases superfamily protein 1Chr17:39047449–39049009 (+)8.15e-12