Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18253

Metabolite ID
P18253
Deionized mass
936.2727 Da
Average m/z
937.2761
Average RT
12.7258
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.778e-13
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)4.655e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.181e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.188e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.731e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.327e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.327e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.748e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.222e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.749e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.502e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.722e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.722e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)7.712e-12
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)1.458e-12
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)1.995e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.457e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.066e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.344e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.818e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.891e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.718e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.554e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.554e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.047e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.012e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.012e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.012e-16
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.34e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.842e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)8.664e-11
Glyma.06G255900 hypothetical protein NA 1Chr06:43736673–43740688 (+)8.696e-11
Glyma.06G260200 hypothetical protein AT1G60690:AT1G60690:NAD(P)-linked oxidoreductase superfamily protein__AT1G60710:ATB2:NAD(P)-linked oxidoreductase super… 1Chr06:44529441–44533552 (-)9.655e-11
Glyma.06G260300 hypothetical protein AT1G60730:AT1G60730:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:44535490–44539648 (-)9.655e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)7.632e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.779e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.779e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.748e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.181e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.181e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.181e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.181e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.347e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.41e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)6.443e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.028e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.028e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.331e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.331e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.764e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.764e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.829e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.24e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.188e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.731e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.473e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.473e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.327e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.091e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.561e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.222e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.764e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.256e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.501e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.025e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.5e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.501e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.856e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.747e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.735e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.735e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.747e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.948e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)4.783e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.887e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)5.67e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.555e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.725e-11