Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18062

Metabolite ID
P18062
Deionized mass
966.2622 Da
Average m/z
967.2727
Average RT
12.6922
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.539e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)4.32e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.263e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.263e-12
Glyma.02G115700 hypothetical protein AT1G26500:AT1G26500:Pentatricopeptide repeat (PPR) superfamily protein 1Chr02:11265298–11266785 (-)1.832e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)1.387e-13
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)5.337e-12
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.78e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.811e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.273e-17
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)3.093e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)9.333e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.082e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.686e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.686e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.054e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.435e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.435e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.435e-14
Glyma.05G162400 hypothetical protein NA 1Chr05:35357223–35358831 (+)9.593e-11
Glyma.05G162500 hypothetical protein NA 1Chr05:35371190–35375992 (+)9.593e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)1.889e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.137e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.809e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)6.216e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.359e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.173e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.471e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.513e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.627e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.931e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.684e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.338e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.443e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.336e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)6.777e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.911e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.911e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.911e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.122e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.667e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.549e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.549e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.549e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.421e-11
Glyma.14G075800 hypothetical protein NA 1Chr14:6352738–6361730 (+)6.075e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.696e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.655e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.797e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.797e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)2.514e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.133e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.168e-13
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)6.287e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)9.938e-11
Glyma.20G149900 hypothetical protein NA 1Chr20:38879682–38881629 (-)6.833e-11