Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18024

Metabolite ID
P18024
Deionized mass
504.1919 Da
Average m/z
505.1956
Average RT
12.6816
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)6.642e-18
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)2.334e-13
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)4.808e-13
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.43e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.911e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)7.902e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.633e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)8.381e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.941e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.066e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.447e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.447e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.028e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.098e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.098e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.098e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.582e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.996e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.109e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.109e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.109e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.173e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)3.42e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.557e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.557e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.557e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.557e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.557e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.027e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.544e-11
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)2.04e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.719e-12
Glyma.13G060200 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 1Chr13:15749985–15754961 (+)4.161e-11
Glyma.13G062200 hypothetical protein AT5G15270:AT5G15270:RNA-binding KH domain-containing protein 1Chr13:15985083–15991185 (-)9.982e-11
Glyma.13G062500 hypothetical protein NA 1Chr13:16016181–16019533 (-)9.982e-11
Glyma.13G062700 hypothetical protein AT3G01180:SS2:starch synthase 2 1Chr13:16045152–16059846 (-)1.72e-11
Glyma.13G062800 hypothetical protein AT5G48600:SMC3:structural maintenance of chromosome 3 1Chr13:16067222–16078901 (-)1.72e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.365e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.464e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.871e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.453e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.871e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.87e-13
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.794e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.186e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.534e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)2.931e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)2.931e-11
Glyma.18G107300 hypothetical protein NA 1Chr18:12091200–12095291 (-)9.072e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)3.704e-11
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)3.704e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)3.347e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.681e-12