Overview Annotation GWAS Evidence Associated genes

P17955

Metabolite ID
P17955
Deionized mass
589.2443 Da
Average m/z
590.2521
Average RT
12.6678
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
6
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

6 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G112900 hypothetical protein AT5G65950:AT5G65950:trafficking protein particle complex subunit-like protein 2Chr16:25064625–25072914 (-)1.636e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.448e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.638e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.495e-13
Glyma.16G112800 hypothetical protein AT1G30590:AT1G30590:RNA polymerase I specific transcription initiation factor RRN3 protein__AT2G34750:AT2G34750:RNA pol… 1Chr16:25033921–25041652 (+)1.636e-11
Glyma.16G122200 hypothetical protein AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr16:27104326–27110822 (-)5.043e-11