Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17888

Metabolite ID
P17888
Deionized mass
332.1286 Da
Average m/z
333.1342
Average RT
12.6511
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 2Chr01:1009200–1013846 (+)2.287e-15
Glyma.05G147700 hypothetical protein NA 2Chr05:34199925–34202541 (+)5.514e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.282e-11
Glyma.02G116600 hypothetical protein AT1G13770:RUS3:root UVB sensitive protein (Protein of unknown function, DUF647) 1Chr02:11357006–11362220 (-)1.396e-11
Glyma.02G116700 hypothetical protein AT1G68980:AT1G68980:Tetratricopeptide repeat (TPR)-like superfamily protein__AT1G69290:AT1G69290:Pentatricopeptide repe… 1Chr02:11375844–11381371 (+)1.396e-11
Glyma.02G116800 hypothetical protein NA 1Chr02:11389946–11393074 (+)1.396e-11
Glyma.02G116900 hypothetical protein NA 1Chr02:11394318–11395331 (-)1.021e-11
Glyma.02G117100 hypothetical protein AT2G03620:MGT3:magnesium transporter 3 1Chr02:11400594–11409016 (-)1.396e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.132e-12
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)1.702e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)1.063e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)4.156e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.265e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.385e-12
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)4.199e-11
Glyma.05G154000 hypothetical protein NA 1Chr05:34732843–34735376 (-)2.322e-11
Glyma.05G168200 hypothetical protein AT3G58970:MGT6:magnesium transporter 6__AT4G28580:MGT5:magnesium transport 5 1Chr05:35871339–35874984 (-)1.292e-12
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)4.646e-11
Glyma.05G169700 hypothetical protein NA 1Chr05:36006723–36008584 (+)2.002e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.484e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.606e-11
Glyma.06G079500 hypothetical protein NA 1Chr06:6107326–6110770 (+)6.541e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.885e-12
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)6.4e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)6.4e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.287e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.287e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)9.233e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.59e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.59e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.381e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)7.1e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)5.482e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.559e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.275e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.559e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.559e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.797e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.209e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.172e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)2.17e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.783e-12