Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17777

Metabolite ID
P17777
Deionized mass
350.0610 Da
Average m/z
351.0673
Average RT
12.6214
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
98
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

98 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)2.275e-16
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.382e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.907e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.834e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.362e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.398e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.402e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.402e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.906e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.372e-14
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.836e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.872e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.871e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.484e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.551e-16
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.363e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.269e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.753e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.483e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)3.483e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.483e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.483e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.085e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.096e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.096e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.096e-12
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)6.035e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.437e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.205e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.564e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.564e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.249e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.066e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.398e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.398e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.398e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.398e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.86e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)1.917e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.617e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.05e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.05e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.05e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.05e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.903e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.606e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.192e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)4.246e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.475e-16
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)6.493e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)5.423e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.458e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.459e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.906e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.906e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.069e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.069e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.084e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.207e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.62e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.62e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.402e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.906e-14
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.557e-11
Glyma.15G154600 hypothetical protein AT2G34900:IMB1:Transcription factor GTE6 1Chr15:12869005–12877308 (-)1.536e-13
Glyma.15G154800 hypothetical protein AT1G30840:PUP4:purine permease 4 1Chr15:12885652–12899379 (+)1.536e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.826e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.382e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.382e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.382e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.382e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)8.131e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.736e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.457e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.708e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.834e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.834e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.053e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.04e-15
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)5.218e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.05e-15
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.191e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)6.661e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.168e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.212e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.362e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.691e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.691e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.051e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.051e-13
Glyma.18G025700 hypothetical protein AT3G11110:AT3G11110:RING/U-box superfamily protein 1Chr18:1911249–1912730 (+)1.892e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)8.934e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.314e-11
Glyma.19G201800 hypothetical protein NA 1Chr19:45885155–45889932 (-)9.67e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.063e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.347e-11
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)4.724e-11
Glyma.20G189700 hypothetical protein AT3G24730:AT3G24730:mRNA splicing factor, thioredoxin-like U5 snRNP 1Chr20:42832689–42843269 (+)2.113e-11