Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17706

Metabolite ID
P17706
Deionized mass
555.2256 Da
Average m/z
556.2354
Average RT
12.6032
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 2Chr06:49315918–49324382 (+)1.211e-14
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)6.981e-14
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)3.936e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.719e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)5.309e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)6.997e-13
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.211e-14
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)4.456e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)4.456e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.257e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.812e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.812e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.812e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.812e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.792e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.428e-13
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)5.234e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)6.001e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)6.001e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)6.001e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)6.001e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)6.001e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)6.001e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)6.001e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)6.001e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)6.001e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)6.001e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)6.001e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)6.001e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)6.001e-11
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)1.184e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)1.184e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)1.184e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)1.184e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)2.647e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.724e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.551e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.67e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.67e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.855e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.997e-11
Glyma.19G027900 hypothetical protein AT5G15450:CLPB3:casein lytic proteinase B3 1Chr19:3485283–3498153 (-)1.861e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)9.789e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.47e-11