Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17644

Metabolite ID
P17644
Deionized mass
503.1106 Da
Average m/z
504.1206
Average RT
12.5856
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.376e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)3.548e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)7.981e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.829e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.825e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.775e-12
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)4.246e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.655e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.671e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.429e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.34e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.469e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.523e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.871e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)6.641e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.908e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.497e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)6.224e-14
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.216e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.216e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.015e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.318e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.318e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.943e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.943e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.943e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.421e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.996e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.431e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.997e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.997e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.717e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.476e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.226e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.187e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.399e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.398e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.104e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.839e-14
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.109e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.376e-12
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)7.596e-11