Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17623

Metabolite ID
P17623
Deionized mass
124.0874 Da
Average m/z
125.0950
Average RT
12.5818
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.334e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.327e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.327e-13
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)8.381e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.929e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.903e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.176e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.422e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.912e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.182e-13
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)6.515e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)6.515e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.532e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)4.131e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.625e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.625e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.799e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.799e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.12e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.12e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.697e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.444e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.072e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.072e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.334e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.602e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.602e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.327e-13
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.738e-14
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.725e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.091e-11
Glyma.15G138500 hypothetical protein NA 1Chr15:11270083–11275565 (-)3.505e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.821e-12
Glyma.18G233700 hypothetical protein AT2G45950:SK20:SKP1-like 20 1Chr18:52230225–52239858 (-)3.299e-12
Glyma.18G233800 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr18:52242918–52244877 (+)3.299e-12
Glyma.18G234000 hypothetical protein AT4G29910:ORC5:origin recognition complex protein 5 1Chr18:52246538–52249964 (-)3.299e-12
Glyma.18G234200 hypothetical protein AT2G45990:AT2G45990:ribosomal RNA small subunit methyltransferase G 1Chr18:52261570–52265243 (+)3.299e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.514e-11
Glyma.20G114000 hypothetical protein NA 1Chr20:35578719–35584659 (-)2.193e-12
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)3.019e-11