Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17596

Metabolite ID
P17596
Deionized mass
300.0272 Da
Average m/z
301.0331
Average RT
12.5752
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.347e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.478e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.445e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.445e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.196e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.856e-13
Glyma.01G031900 hypothetical protein AT1G23870:TPS9:trehalose-phosphatase/synthase 9 1Chr01:3342396–3347771 (+)4.462e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)5.289e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.879e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.879e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.902e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.187e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.693e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.479e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.48e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.606e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)5.021e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.445e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.445e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.445e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)8.099e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.479e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.715e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.298e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.298e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.298e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.298e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.11e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.11e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.776e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.715e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.478e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.053e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.053e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.25e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.536e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.25e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.25e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.244e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)3.683e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.287e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.787e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.916e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.968e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.968e-14
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.074e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)6.568e-11
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)6.568e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)8.788e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.382e-12