Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17543

Metabolite ID
P17543
Deionized mass
645.6183 Da
Average m/z
646.6255
Average RT
12.5646
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.302e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.908e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.815e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 2Chr07:6307073–6313498 (-)3.086e-11
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 2Chr07:6364435–6372387 (-)2.134e-11
Glyma.18G244100 hypothetical protein NA 2Chr18:53193558–53202738 (-)8.002e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.187e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)7.018e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)7.018e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)7.018e-12
Glyma.03G022400 hypothetical protein NA 1Chr03:2334661–2335316 (+)4.636e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.738e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.915e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.19e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.478e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)1.719e-11
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)1.672e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.126e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.126e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.912e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.068e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.524e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.524e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.846e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.352e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.287e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.61e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.292e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)8.491e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.28e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.158e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.815e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.675e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.675e-13
Glyma.16G218700 hypothetical protein AT5G22110:DPB2:DNA polymerase epsilon subunit B2 1Chr16:37608196–37613873 (+)3.765e-11
Glyma.16G219000 hypothetical protein NA 1Chr16:37634112–37638596 (-)8.389e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)2.821e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.911e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)4.974e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.911e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.912e-11
Glyma.18G244000 hypothetical protein AT1G65270:AT1G65270:ER membrane protein complex subunit-like protein 1Chr18:53188685–53193206 (+)8.002e-12
Glyma.18G244300 hypothetical protein AT1G65290:mtACP2:mitochondrial acyl carrier protein 2 1Chr18:53208864–53210903 (-)8.002e-12
Glyma.18G244400 hypothetical protein AT3G03330:AT3G03330:NAD(P)-binding Rossmann-fold superfamily protein 1Chr18:53211659–53216296 (+)8.001e-12
Glyma.18G244500 Phospholipase A(1) LCAT3 AT3G03310:LCAT3:lecithin:cholesterol acyltransferase 3 1Chr18:53223323–53229990 (+)1.855e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.28e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.172e-13