Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17530

Metabolite ID
P17530
Deionized mass
330.1624 Da
Average m/z
331.1711
Average RT
12.5609
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.119e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)2.605e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.032e-12
Glyma.01G230800 hypothetical protein AT4G10050:AT4G10050:esterase/lipase/thioesterase family protein 1Chr01:55803995–55808033 (+)4.957e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)6.687e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.537e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)9.386e-13
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)6.167e-11
Glyma.02G108500 hypothetical protein AT1G69580:AT1G69580:Homeodomain-like superfamily protein 1Chr02:10349252–10351608 (-)3.983e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.053e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.221e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.645e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.078e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.521e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.521e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.053e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.444e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.444e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.444e-14
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.909e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.363e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.419e-13
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)7.691e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)7.448e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.119e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.119e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.73e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.065e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.809e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.087e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.032e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.032e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.032e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.032e-12
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)6.967e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.371e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.434e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.434e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.44e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.44e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.44e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.105e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.045e-11
Glyma.18G003300 hypothetical protein NA 1Chr18:276941–280909 (+)7.291e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.503e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.503e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.255e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.255e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.584e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.271e-12