Overview Annotation GWAS Evidence Associated genes

P17523

Metabolite ID
P17523
Deionized mass
501.2546 Da
Average m/z
502.2594
Average RT
12.5595
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
9
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

9 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.646e-12
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2Chr16:7255773–7261809 (+)1.521e-11
Glyma.18G106300 hypothetical protein NA 2Chr18:11900700–11905446 (-)1.119e-13
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)1.525e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.245e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.646e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.913e-11
Glyma.18G105800 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein 1Chr18:11773374–11782733 (+)5.499e-11
Glyma.18G106200 hypothetical protein NA 1Chr18:11885006–11886068 (+)7.714e-11