Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17522

Metabolite ID
P17522
Deionized mass
410.1464 Da
Average m/z
411.1551
Average RT
12.5595
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.212e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.67e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.83e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.83e-14
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)8.633e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.987e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)6.704e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.146e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.211e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.931e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.868e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.814e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.086e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.048e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.573e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.554e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.408e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.408e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.527e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.811e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.83e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.83e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.125e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.83e-14
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.983e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.959e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.262e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.262e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1e-10
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.649e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.649e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.649e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.649e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.527e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.955e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.503e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.799e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.799e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.799e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.799e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.392e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.392e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.392e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.899e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.899e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.899e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.625e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.69e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.987e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)9.311e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.25e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.103e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.509e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.003e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.755e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.953e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)6.704e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.926e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.926e-14
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.144e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.722e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.506e-11