Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17519

Metabolite ID
P17519
Deionized mass
270.0739 Da
Average m/z
271.0806
Average RT
12.5578
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.359e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)6.679e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)3.619e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.236e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.99e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.288e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.391e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.359e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.172e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)7.882e-14
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.396e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.851e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.136e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)5.866e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.506e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)9.038e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.058e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.115e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.837e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.862e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.164e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.581e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.581e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.147e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.646e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.646e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.317e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)9.621e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.098e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.4e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.955e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.236e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.236e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.236e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)9.909e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.517e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.513e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.082e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.409e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.04e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.949e-12
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)3.661e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.023e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.023e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.628e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.628e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.628e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.628e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.084e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.056e-14
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)9.486e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.355e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.332e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)5.4e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.315e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)4.5e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.07e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.99e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.168e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.032e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.032e-12
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)8.464e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.731e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.208e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.05e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.05e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.981e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.322e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.007e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.698e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)2.131e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)5.12e-11