Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17369

Metabolite ID
P17369
Deionized mass
643.2728 Da
Average m/z
644.2773
Average RT
12.5229
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
55
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

55 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.086e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.932e-12
Glyma.18G259000 hypothetical protein NA 2Chr18:54442402–54446789 (-)2.187e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.967e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.298e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.413e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.049e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.952e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.258e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.044e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.422e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.422e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.422e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.557e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.557e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.16e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)6.893e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.736e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.736e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.013e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.086e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.086e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.086e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.086e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.472e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.913e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.107e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.589e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.589e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.477e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.477e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.477e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.477e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.859e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.664e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.017e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.148e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.148e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.623e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.623e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.554e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.554e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)9.209e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.932e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.081e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.375e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.375e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.814e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.814e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)6.582e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)2.853e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.506e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.506e-17
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.656e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.201e-13