Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17277

Metabolite ID
P17277
Deionized mass
698.2746 Da
Average m/z
699.2807
Average RT
12.4981
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.251e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.145e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)2.073e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.073e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.132e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)4.618e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)6.498e-12
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)5.963e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)5.034e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)4.962e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.487e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.244e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.244e-13
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)7.031e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.618e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.916e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)9.376e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.117e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.144e-11
Glyma.03G073300 hypothetical protein AT1G79210:AT1G79210:N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 1Chr03:17770362–17785644 (+)2.828e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.216e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.592e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.933e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)5.597e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.73e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.216e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.073e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.073e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.073e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.948e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.948e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.081e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.202e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)5.43e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.682e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.682e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.682e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.15e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.399e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.243e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.725e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.516e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.714e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)7.016e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)8.192e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.076e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.464e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.089e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.618e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.777e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.748e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.081e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.498e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.442e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.755e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.463e-13