Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17173

Metabolite ID
P17173
Deionized mass
790.1956 Da
Average m/z
791.2023
Average RT
12.4682
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.948e-17
Glyma.06G196600 hypothetical protein AT1G18660:AT1G18660:zinc finger (C3HC4-type RING finger) family protein 2Chr06:17679247–17694559 (+)2.948e-17
Glyma.06G196900 hypothetical protein AT1G18670:IBS1:Protein kinase superfamily protein 2Chr06:17770435–17777991 (-)2.948e-17
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 2Chr06:18655235–18667810 (-)2.949e-17
Glyma.08G085100 DNA-directed RNA polymerase II subunit 7 AT5G59180:NRPB7:DNA-directed RNA polymerase II 2Chr08:6402615–6407035 (+)2.797e-14
Glyma.12G211000 hypothetical protein AT3G58640:AT3G58640:Mitogen activated protein kinase kinase kinase-like protein 2Chr12:37000977–37014556 (-)3.721e-13
Glyma.01G171600 hypothetical protein NA 1Chr01:50884031–50885430 (-)1.958e-21
Glyma.01G176700 hypothetical protein AT5G39350:AT5G39350:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr01:51335452–51340475 (+)1.958e-21
Glyma.01G218600 hypothetical protein NA 1Chr01:54849376–54854956 (-)6.742e-11
Glyma.01G228500 hypothetical protein AT3G16090:Hrd1A:RING/U-box superfamily protein__AT1G65040:Hrd1B:RING/U-box superfamily protein 1Chr01:55648318–55653661 (+)1.958e-21
Glyma.01G235300 hypothetical protein AT1G05470:CVP2:DNAse I-like superfamily protein 1Chr01:56116960–56121898 (-)1.958e-21
Glyma.01G241300 hypothetical protein AT1G50030:TOR:target of rapamycin 1Chr01:56488899–56535775 (+)1.958e-21
Glyma.02G027000 hypothetical protein NA 1Chr02:2445405–2446914 (-)1.958e-21
Glyma.05G199800 hypothetical protein NA 1Chr05:38348141–38354229 (-)2.797e-14
Glyma.05G207600 hypothetical protein AT4G23100:GSH1:glutamate-cysteine ligase 1Chr05:38975612–38983738 (-)2.797e-14
Glyma.05G218700 hypothetical protein AT4G24015:AT4G24015:RING/U-box superfamily protein 1Chr05:39838913–39840960 (-)2.797e-14
Glyma.05G225100 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr05:40387813–40393404 (+)1.958e-21
Glyma.05G225700 hypothetical protein AT4G29350:PFN2:profilin 2__AT2G19760:PRF1:profilin 1 1Chr05:40432149–40439631 (+)1.958e-21
Glyma.05G226100 hypothetical protein NA 1Chr05:40466087–40467810 (-)1.958e-21
Glyma.05G230200 hypothetical protein NA 1Chr05:40815058–40819434 (+)1.958e-21
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.958e-21
Glyma.06G196800 hypothetical protein NA 1Chr06:17730576–17745157 (-)2.949e-17
Glyma.06G197200 hypothetical protein NA 1Chr06:17904627–17905751 (-)4.106e-12
Glyma.06G198600 hypothetical protein NA 1Chr06:18059627–18063976 (-)2.948e-17
Glyma.06G199500 hypothetical protein NA 1Chr06:18212695–18214544 (-)2.949e-17
Glyma.06G200000 hypothetical protein AT5G61250:GUS1:glucuronidase 1 1Chr06:18315162–18320824 (+)2.948e-17
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.949e-17
Glyma.06G201300 hypothetical protein NA 1Chr06:18521202–18524012 (-)2.949e-17
Glyma.06G201800 hypothetical protein AT5G07960:AT5G07960:asterix-like protein 1Chr06:18631314–18635564 (-)2.948e-17
Glyma.06G202100 hypothetical protein AT5G61150:VIP4:leo1-like family protein 1Chr06:18694636–18699928 (+)4.453e-11
Glyma.08G043900 hypothetical protein NA 1Chr08:3458488–3466169 (+)1.958e-21
Glyma.08G064400 hypothetical protein NA 1Chr08:4927906–4929447 (-)2.796e-14
Glyma.08G074700 hypothetical protein AT5G64570:XYL4:beta-D-xylosidase 4__AT5G09700:AT5G09700:Glycosyl hydrolase family protein 1Chr08:5707293–5712830 (+)2.797e-14
Glyma.08G080000 hypothetical protein NA 1Chr08:6076298–6077881 (+)2.796e-14
Glyma.08G081700 hypothetical protein AT5G61820:AT5G61820:stress up-regulated Nod 19 protein 1Chr08:6174443–6177152 (-)2.796e-14
Glyma.08G084300 KASI beta-ketoacyl-ACP synthetase I AT5G46290:KASI:3-ketoacyl-acyl carrier protein synthase I 1Chr08:6354366–6359411 (+)2.797e-14
Glyma.08G084800 Eu3 AT2G34470:UREG:urease accessory protein G 1Chr08:6378814–6382813 (+)2.797e-14
Glyma.08G084900 hypothetical protein NA 1Chr08:6385327–6386735 (+)2.797e-14
Glyma.10G017700 hypothetical protein AT4G02390:PARP2:poly(ADP-ribose) polymerase 1Chr10:1546393–1552506 (+)1.958e-21
Glyma.10G236900 hypothetical protein AT3G48880:AT3G48880:RNI-like superfamily protein 1Chr10:46571852–46575791 (+)1.958e-21
Glyma.10G253100 hypothetical protein NA 1Chr10:48074590–48077928 (+)1.958e-21
Glyma.10G267000 hypothetical protein AT1G15140:AT1G15140:FAD/NAD(P)-binding oxidoreductase 1Chr10:49015643–49018864 (-)1.958e-21
Glyma.11G247400 hypothetical protein AT3G25980:MAD2:DNA-binding HORMA family protein 1Chr11:34020239–34022412 (-)1.239e-14
Glyma.11G249500 hypothetical protein AT1G67460:AT1G67460:Minichromosome maintenance (MCM2/3/5) family protein__AT1G67440:emb1688:Minichromosome maintenance … 1Chr11:34160230–34163551 (+)1.239e-14
Glyma.12G008000 hypothetical protein AT3G52090:NRPB11:DNA-directed RNA polymerase, RBP11-like protein 1Chr12:592967–596657 (+)5.751e-14
Glyma.12G210400 SGF14O 14-3-3 protein SGF14o AT2G42590:GRF9:ral regulatory factor 9 1Chr12:36943077–36946491 (-)3.721e-13
Glyma.12G210600 PEPC4 phosphoenolpyruvate carboxylase AT2G42600:PPC2:phosphoenolpyruvate carboxylase 2 1Chr12:36952133–36958451 (-)3.721e-13
Glyma.12G210900 hypothetical protein NA 1Chr12:36990154–36995394 (-)3.721e-13
Glyma.12G211200 hypothetical protein NA 1Chr12:37016358–37017036 (+)3.721e-13
Glyma.12G213900 hypothetical protein NA 1Chr12:37310637–37312496 (-)1.958e-21
Glyma.12G214200 hypothetical protein AT4G04790:AT4G04790:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr12:37351424–37363980 (+)1.958e-21
Glyma.14G218200 hypothetical protein AT1G75690:LQY1:DnaJ/Hsp40 cysteine-rich domain superfamily protein 1Chr14:48344660–48348188 (-)2.97e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)9.793e-15
Glyma.15G048400 hypothetical protein NA 1Chr15:3822413–3826590 (+)9.793e-15
Glyma.15G147100 hypothetical protein NA 1Chr15:12132569–12139383 (-)1.386e-13
Glyma.16G028400 hypothetical protein NA 1Chr16:2746460–2748431 (+)1.102e-14
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)1.958e-21
Glyma.17G205800 hypothetical protein AT5G11320:YUC4:Flavin-binding monooxygenase family protein 1Chr17:33528567–33531315 (-)5.571e-12
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)5.571e-12
Glyma.19G115100 hypothetical protein AT5G35910:AT5G35910:Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein 1Chr19:37017751–37038331 (+)2.797e-14
Glyma.19G115700 hypothetical protein AT3G04480:AT3G04480:endoribonuclease 1Chr19:37087997–37096403 (+)2.797e-14
Glyma.19G130800 hypothetical protein NA 1Chr19:39069648–39108791 (+)2.797e-14
Glyma.19G152400 hypothetical protein AT2G48020:AT2G48020:Major facilitator superfamily protein 1Chr19:41280116–41284781 (+)2.797e-14
Glyma.19G153300 hypothetical protein AT4G02920:AT4G02920:uncharacterized protein 1Chr19:41361998–41367100 (-)2.797e-14
Glyma.19G153600 hypothetical protein NA 1Chr19:41380276–41385592 (+)2.797e-14
Glyma.19G159700 hypothetical protein NA 1Chr19:42064879–42066838 (+)2.797e-14
Glyma.20G198900 hypothetical protein AT5G51120:PABN1:polyadenylate-binding protein 1 1Chr20:43666066–43676725 (+)2.797e-14