Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17163

Metabolite ID
P17163
Deionized mass
452.1782 Da
Average m/z
453.1867
Average RT
12.4662
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
108
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

108 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.284e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.185e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.042e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.132e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.846e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.846e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.651e-15
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.288e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.95e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.77e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.537e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)9.391e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.877e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.229e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.073e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.82e-11
Glyma.04G107900 hypothetical protein AT3G53990:AT3G53990:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr04:11421366–11422972 (-)7.49e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.738e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.341e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.047e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.647e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.226e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.994e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.994e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.994e-14
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.709e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.709e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.177e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.177e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.315e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.327e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.676e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.599e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.284e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.284e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.251e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.492e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.202e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)8.48e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.978e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.978e-11
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)9.479e-13
Glyma.09G056400 hypothetical protein NA 1Chr09:5080364–5088515 (-)4.207e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)9.359e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)9.432e-16
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.153e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.001e-14
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)7.11e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.176e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.218e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.509e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.517e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.061e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)2.67e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.526e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.028e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.028e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.297e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.524e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.492e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.492e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.412e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.032e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.042e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.511e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.511e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.846e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.396e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.941e-13
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)2.447e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)4.341e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.916e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.742e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.823e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.233e-15
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.359e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)2.828e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)2.828e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)2.828e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.819e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.683e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.092e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.092e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.896e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.305e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.896e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.896e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.068e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.584e-13
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)8.28e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.502e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.868e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.083e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.083e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.46e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.46e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)4.541e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.953e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)4.541e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)4.541e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.395e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.032e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.982e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.016e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.324e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.323e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.403e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)3.998e-11