Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17123

Metabolite ID
P17123
Deionized mass
118.0405 Da
Average m/z
119.0482
Average RT
12.4580
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.881e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.086e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.356e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.356e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.445e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.804e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.791e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)9.372e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.825e-16
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)5.753e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.231e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)6.479e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)5.695e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.019e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.664e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.564e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.12e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.061e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.716e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.716e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.716e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)9.883e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)9.883e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.299e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)2.599e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.472e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.724e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)8.025e-13
Glyma.08G140900 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr08:10760962–10769630 (-)8.793e-12
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.455e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.634e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.351e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.393e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.826e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.681e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.131e-11
Glyma.11G110100 hypothetical protein AT2G16510:AT2G16510:ATPase, F0/V0 complex, subunit C protein 1Chr11:8397135–8398949 (-)7.217e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.442e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.474e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.474e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.474e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)7.589e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.499e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.499e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.881e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.563e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.783e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.783e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.356e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.38e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.016e-17
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.158e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.445e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.096e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.61e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.096e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.096e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.914e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.727e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.237e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.901e-14
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.11e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.114e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.12e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.942e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.287e-15
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)5.334e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.001e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.916e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.296e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)5.871e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.086e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.609e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.347e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.851e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)6.032e-12