Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16985

Metabolite ID
P16985
Deionized mass
607.2790 Da
Average m/z
608.2864
Average RT
12.4254
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)3.888e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.762e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.762e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.429e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.429e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.429e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.157e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.696e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 2Chr20:2039210–2040459 (+)2.443e-11
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)2.283e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.965e-11
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)1.147e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.361e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.1e-14
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)3.888e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)5.136e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.11e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.299e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.213e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.762e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.762e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.762e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.84e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.048e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.048e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.608e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.11e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.256e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.678e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.386e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.561e-11
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)3.336e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.429e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.429e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.429e-14
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.429e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.429e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.17e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.437e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.437e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.437e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.437e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.42e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.876e-16
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.854e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.175e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.175e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.175e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.175e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)1.023e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.309e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.309e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.309e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.184e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.619e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.696e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.382e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.331e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)8.813e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.393e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.393e-14
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.427e-12
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)6.978e-11