Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16935

Metabolite ID
P16935
Deionized mass
251.1499 Da
Average m/z
252.1570
Average RT
12.4109
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.736e-18
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.296e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.3e-12
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 2Chr16:30388030–30390647 (-)1.181e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)2.642e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.265e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.386e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.218e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.218e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.261e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.648e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.244e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.014e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.954e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.817e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)4.313e-12
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.523e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.549e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.549e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.119e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.119e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)5.919e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.055e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.055e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.758e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.708e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.771e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.771e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.584e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.572e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.572e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.572e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.289e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.3e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)2.182e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.828e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.792e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.828e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.828e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.847e-16
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.57e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)7.119e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.571e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.265e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.448e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.097e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.472e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.472e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)6.407e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.386e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)5.635e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.719e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.896e-12
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)6.31e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.395e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)5.378e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.942e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.709e-11