Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16652

Metabolite ID
P16652
Deionized mass
358.1537 Da
Average m/z
359.1605
Average RT
12.3387
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.9e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)9.273e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)9.257e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.665e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.783e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.117e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.192e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.192e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.192e-13
Glyma.05G188500 hypothetical protein AT3G27740:CARA:carbamoyl phosphate synthetase A 1Chr05:37445235–37448125 (+)1.759e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.643e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.529e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.474e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.589e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)3.589e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.589e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.589e-12
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)5.779e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.046e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.879e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.605e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.752e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.605e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.605e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.752e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.66e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.239e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.673e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.673e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.673e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.629e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)7.552e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)2.709e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)8.886e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)8.886e-11
Glyma.15G120800 hypothetical protein AT5G47730:AT5G47730:Sec14p-like phosphatidylinositol transfer family protein 1Chr15:9552374–9557218 (-)9.981e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.39e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.143e-16
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)1.328e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.9e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.9e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.176e-12
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)7.975e-11