Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16650

Metabolite ID
P16650
Deionized mass
277.1012 Da
Average m/z
278.1087
Average RT
12.3386
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G068800 hypothetical protein NA 3Chr07:6211775–6221107 (-)1.428e-13
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 3Chr07:6307073–6313498 (-)1.911e-15
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.01e-12
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)3.626e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)3.862e-13
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)9.5e-16
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)9.451e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.791e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.12e-12
Glyma.01G030500 hypothetical protein NA 1Chr01:3189212–3200277 (+)1.923e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.454e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)5.652e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.815e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.717e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.611e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)7.246e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.828e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.058e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.754e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.032e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.793e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.262e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.262e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.859e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)7.474e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)7.474e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.375e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.139e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.005e-13
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)5.961e-12
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)5.708e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.862e-13
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.428e-13
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.862e-13
Glyma.07G070200 hypothetical protein AT1G20930:CDKB2;2:cyclin-dependent kinase B2;2 1Chr07:6362067–6364280 (+)6.093e-12
Glyma.07G070300 hypothetical protein AT2G45910:AT2G45910:U-box domain-containing protein kinase family protein 1Chr07:6364435–6372387 (-)5.305e-11
Glyma.07G072900 hypothetical protein NA 1Chr07:6636336–6643709 (+)9.371e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)9.002e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.711e-15
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.22e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.344e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.563e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)2.375e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)9.433e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.936e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.936e-13
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)7.412e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.624e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.624e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.624e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.624e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.241e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.087e-17
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.362e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.943e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.25e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.25e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.95e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.994e-12
Glyma.14G205100 hypothetical protein NA 1Chr14:47020646–47026852 (+)9.436e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.088e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.039e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.086e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.35e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.125e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.712e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)7.689e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.859e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.056e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.974e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.01e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.665e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.665e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)6.488e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.557e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.791e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.453e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.27e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.97e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.966e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.084e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.489e-11