Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16635

Metabolite ID
P16635
Deionized mass
257.1235 Da
Average m/z
258.1311
Average RT
12.3354
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.304e-14
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.763e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 3Chr16:34364037–34367765 (-)7.959e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.046e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.343e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.351e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.752e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.646e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.034e-12
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)3.267e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)8.996e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.284e-17
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.433e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.079e-17
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.136e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.755e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.967e-14
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.108e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.108e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.108e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.32e-11
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)6.893e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.396e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)1.22e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)3.97e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)3.97e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)2.753e-11
Glyma.08G114600 hypothetical protein NA 1Chr08:8763388–8766206 (-)8.659e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)8.148e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.768e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.732e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)2.017e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)5.388e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.942e-17
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.942e-17
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.919e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.919e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.882e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.364e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.429e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.752e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.012e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)3.828e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.409e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.409e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.41e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)5.401e-11
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)8.99e-11
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)8.99e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.876e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.062e-11
Glyma.16G173700 hypothetical protein AT5G52882:AT5G52882:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr16:33430875–33438490 (+)5.877e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)3.386e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.804e-16
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)1.431e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.163e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.766e-12
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)6.235e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.006e-12
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)2.189e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.316e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.352e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.009e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.009e-14
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.24e-11
Glyma.18G079100 hypothetical protein NA 1Chr18:7600652–7603424 (-)5.206e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.962e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)6.922e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.438e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)4.536e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.634e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.147e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.343e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.775e-11