Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16616

Metabolite ID
P16616
Deionized mass
366.0554 Da
Average m/z
367.0640
Average RT
12.3277
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.349e-12
Glyma.09G231100 hypothetical protein AT5G42970:COP8:Proteasome component (PCI) domain protein 2Chr09:45450922–45457330 (-)2.717e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)1.249e-11
Glyma.01G039600 hypothetical protein NA 1Chr01:4300332–4302844 (-)3.896e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)8.771e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)6.458e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.318e-13
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)3.318e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.596e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.434e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)1.881e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)1.881e-11
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)1.611e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)6.204e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.491e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.492e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.491e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.728e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.365e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.365e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.39e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)5.271e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.701e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.749e-11
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)9.347e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.749e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)4.741e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.646e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.558e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.312e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.26e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.168e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.423e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.282e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.423e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.423e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.178e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.178e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.677e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)3.857e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)9.894e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.725e-11
Glyma.18G264000 hypothetical protein AT3G29270:AT3G29270:RING/U-box superfamily protein 1Chr18:54933280–54938718 (+)6.272e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)3.334e-12
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)4.997e-16
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)1.003e-14