Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16518

Metabolite ID
P16518
Deionized mass
496.1921 Da
Average m/z
497.2016
Average RT
12.2986
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.012e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.205e-12
Glyma.14G193800 hypothetical protein NA 2Chr14:45860185–45866449 (+)5.336e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)2.543e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.184e-13
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.473e-14
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)5.493e-12
Glyma.06G037800 hypothetical protein NA 1Chr06:2894530–2896325 (-)1.21e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.344e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.344e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.093e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.012e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.012e-14
Glyma.09G038800 hypothetical protein NA 1Chr09:3251349–3254283 (+)3.216e-12
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)1.596e-12
Glyma.11G109100 hypothetical protein NA 1Chr11:8322727–8324868 (-)3.452e-11
Glyma.14G193500 hypothetical protein AT5G58730:Mik:pfkB-like carbohydrate kinase family protein 1Chr14:45834143–45837813 (+)6.725e-11
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)7.606e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)6.356e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.806e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.147e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.371e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.371e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.241e-15