Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16408

Metabolite ID
P16408
Deionized mass
293.1261 Da
Average m/z
294.1325
Average RT
12.2672
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)1.03e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.198e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.783e-13
Glyma.18G063200 hypothetical protein NA 2Chr18:5779244–5784529 (+)1.343e-12
Glyma.18G063400 hypothetical protein AT2G29940:ABCG31:pleiotropic drug resistance 3 2Chr18:5796259–5805903 (-)1.343e-12
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)8.776e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.368e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.907e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.947e-12
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)2.899e-12
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)7.225e-12
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)1.73e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.155e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.469e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.469e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.469e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.458e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.609e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.197e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.662e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.363e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.442e-15
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.795e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.765e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)5.79e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.198e-12
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)5.495e-13
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)4.378e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.2e-12
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)5.569e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.549e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.549e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.787e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.787e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.86e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.723e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.579e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.801e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.579e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.579e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)7.468e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.536e-13
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)2.089e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.604e-14
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.5e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)4.703e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)4.703e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)4.703e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.665e-11
Glyma.18G062800 hypothetical protein NA 1Chr18:5752483–5753187 (+)1.343e-12
Glyma.18G064000 hypothetical protein AT1G07230:NPC1:non-specific phospholipase C1 1Chr18:5847976–5851846 (-)1.343e-12
Glyma.18G064700 hypothetical protein AT5G58930:AT5G58930:__AT3G46990:AT3G46990:DUF740 family protein, putative (DUF740) 1Chr18:5893632–5895734 (+)1.343e-12
Glyma.18G065700 hypothetical protein AT2G29630:THIC:thiaminC 1Chr18:6008424–6016165 (+)1.343e-12
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)2.781e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)1.948e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.546e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.546e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.851e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.743e-11