Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16403

Metabolite ID
P16403
Deionized mass
196.0732 Da
Average m/z
197.0797
Average RT
12.2640
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.127e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.444e-11
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)1.513e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.398e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.795e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.599e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.432e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)3.849e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.324e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.615e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.784e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.776e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.413e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.46e-11
Glyma.04G103500 hypothetical protein AT1G78110:AT1G78110:nucleolar GTP-binding protein 1Chr04:9624916–9626694 (-)9.367e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)1.513e-11
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)1.513e-11
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)1.513e-11
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)1.513e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.73e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.73e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.73e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.629e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.433e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.563e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.101e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.766e-13
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.173e-13
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)9.703e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.794e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.794e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.625e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.328e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.599e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.432e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.994e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.047e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.994e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.994e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.176e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.656e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.127e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.127e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.127e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.127e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.46e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.773e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.271e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.095e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)9.796e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.115e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.562e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.115e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.849e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)7.726e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.147e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)8.117e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.089e-11