Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16252

Metabolite ID
P16252
Deionized mass
445.1621 Da
Average m/z
446.1706
Average RT
12.2194
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.368e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)1.204e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)5.881e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.194e-12
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 2Chr08:11253074–11256505 (+)7.462e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)2.42e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.164e-13
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)7.257e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.493e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.849e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)4.834e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.051e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.258e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)7.616e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.059e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.382e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.9e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.296e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)3.851e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.428e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.787e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.787e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.787e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.199e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.199e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.119e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.119e-11
Glyma.06G284900 BZIP50 bZIP transcription factor bZIP50 AT3G58120:BZIP61:Basic-leucine zipper (bZIP) transcription factor family protein__AT2G42380:BZIP34:Basic-leucine zipper… 1Chr06:47339957–47343650 (-)6.116e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.418e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.993e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.418e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.418e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.993e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)5.555e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.949e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.194e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.194e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.194e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.194e-12
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)2.845e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.204e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.51e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.455e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.455e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)3.025e-12
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)6.07e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.273e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)2.358e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.07e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.07e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.203e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.203e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.718e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.939e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.732e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.732e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)9.655e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)7.081e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.666e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.962e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.676e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.383e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.383e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)4.043e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.624e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.083e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.024e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.756e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.208e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.644e-13